Thursday, November 19, 2009

How to salvage a dissertation?

That's the dilemma I'm facing right now. As you know, I work on fish. While I have tanks that house my general population, I have to raise the fish I use for my project from babies because I need virgin females. That takes a few months. I keep my project fish (e.g. the ones I've spent hours photographing, color analyzing, doing mate choice trials, doing molecular work on, etc) in individual little tanks because I have to know who is who. Some of my experimental fish have been alive for almost two years. I am always growing babies so that I have enough fish for my project and was taking care of almost 60 fish in individual tanks until two weeks ago.

The week before last, 10 of my fish died. All were fish that I had done some sort of water change on that week. By the time Monday rolled around, 19 more were dead. Twenty-nine dead fish, 28 remaining. I was devastated, not only for the loss of life (I do actually feel badly when my little fish die), but the enormous amount of resources in terms of time and money I had invested in those fish. I need at least 60-70 fish to complete my project and I was left with 28. How do you recover from something like that? I'm supposed to graduate in May and I can't do that with 28 fish. It will take months to grow up more fish, much less repeating all the steps I'd already completed with the dead fish. Fucking water.

I've been thinking a lot since Friday about the next step. What would my committee say? Would they tell me I've had ample time and even though this was out of my control, why wasn't I farther than this in my project? You see, I've had pretty much every setback in the book on this project. Literally every step has come with great difficulty. When I was on the verge of exploding with progress in September, one critical step began to fail. I won't get into all the details, but somehow my reagents are contaminated and I cannot for the life of me get rid of the contamination. Every day, I try something new, and every day, I fail. I'm getting tired of failing. And having over half of my fish die was just about all I could take. What else could possibly go wrong.

So, I have to decide what to do next. Continue on? What if I don't get rid of the contamination? Is it worth it to spend more time trying to troubleshoot that problem? The worst part is that this technique is very basic-Molecular Biology 101 stuff-and it kills me that this is what is tripping me up. Do I give up my whole project over something that a high school student could do? I've talked to numerous people, followed various lines of advice and while I had some temporary success, the contamination always returns.

The members of my committee whom I've talked to so far have basically said that they will support me in whatever I decide. If I keep going with this project, I'm aiming for a summer graduation. Or do I follow plan B and possibly finish in May? I have a few ideas for alternative projects, but nothing nearly as cool and novel as what I'm doing now. Something that I can't even guarantee I can make work even with more time. I feel like such a failure. I would hate telling people how I had this great project and came so far, but have nothing to show for it. Frankly, this whole process has really killed my love of science. Failing day after day does not boost my confidence in my abilities, nor does it stimulate my curiosity about biological processes.

I made a timeline for my advisor two days ago that assumes everything works perfectly. I wrote a daily plan of attack. Best case scenario, meaning everything works (yeah right) and I come into school seven days/week and work like crazy: I finish labwork at the end of March. And I am already behind on that schedule because of the fucking contamination and because I can't start raising babies until the water problem is resolved. The question is, do I still have the motivation and drive to continue to push forward in spite of my continued failures? Ugh, I don't know. It's a lot to think about.

17 comments:

Sassy said...

I'm so sorry, Mary. I wish I could tell you what to do and solve the contamination issue for you. I know what it's like on some level to feel like a failure at work every single day, but just remember that the real importance in life happens when you leave work (T had to remind me of that today, so it's fresh in my mind).

Yes, your project is extremely important and I'm not taking away from that, but please don't feel like a failure. You have a wonderful husband and doggie...and sometimes focusing on that can help a little when you're feeling down.

You're an awesome person and you deserve the best. I really hope things turn around for you and you can achieve your timeline and find the success you need and have earned.

Emily said...

Wow. I don't know what I'd do in that situation. I'm so sorry you're having such a hard time with this project. I wish I had some advice on what to do. I hope whatever you decide goes smoother from here. Good luck to you!

Sarah said...

Oh Mary, my heart goes out to you. I cannot imagine what it would be like in your shoes right now, that's a huge, tough decision.

Just know that you have SO MANY PEOPLE in support of whatever you decide to do. You are one wicked smart lady. You are also, in fact, the opposite of a failure. A true failure would have stopped trying to figure out what was contaminating the water, would have just given up all together. You're determined to spell out a plan and make it work. I admire you for that, I truly do.

So, whatever you decide, the best of luck to you. You definitely deserve a break, so I hope things start to go a little smoothly. Hold your chin up and please stop thinking of yourself as a failure! It isn't so.

Rhonda said...

You can't think of it as failure- you just can't. If you're a failure, then all scientists are, and that's just not true. It's just part of the job.

A coworker quit her PhD program 10 weeks before her disertation and settled with a masters. It has haunted her everyday of her career; so please don't give up. Both of your plans sound reasonable. You can do it, Mary. Just a few more months. YOU CAN DO IT!

My Husband's Watching TV... said...

I have no idea what you're talking about but it sounds really sucky. I'm sorry nothing is working out for you. Is there a benefit of graduating in May as opposed to August? I mean if this project is what you want to do and there's no real benefit of graduating 3 months early then I say keep on keeping on and you'll get it to work!

Teresa said...

I think Rhonda is very wise in what she said. And clearly, she would understand more than most because of her science background.

I am really sorry this is happening to you.

Maria said...

I'm so sorry Mary. I can understand your frustration after all you have been through. Although I don't have any advice, I wish you all the luck in the world.

Cecilia said...

:: hugs :: I am so sorry it seems like there is no light at the end of the tunnel. I don't know you IRL, but you seem like a very intelligent woman. I wish I had the drive and determination you do. I will keep you in my prayers.

Stephanie said...

So sorry, Mary. But like Rhonda said you are not a failure at all. You have had a major set-back but if your original project is really as novel as you say, I think you should stick with it. I'm sure that every great scientific finding has come to fruition after many, many "failures" along the way but I'm sure the outcome is worth it. Isn't that where the term "trial and error" comes from? Try to think about how minor this will seem years from now when you have you PhD in hand!

Jennelle said...

Wow, Mary, that is so incredibly frustrating. Everyone else is right; you can't think of it as failing every day, just obstacles that you have to overcome. I wish I could say something to comfort you, or help you make a decision, but I can't. It's all up to you, and what is going to be best for YOU. I'll be thinking about you and your fishies!

Meghan said...

I really don't know what to say, except that you are not a failure, no matter what. You CAN do anything :)

Katie said...

I feel for you Mary! What a tough decision. I probably wouldn't give up, but you know your situation best. I know you can do it and you are supported in whatever you choose.

Sarah said...

I'm chiming in behind Rhonda as well. So much of science is failure. It sucks and is really hard in the moment, but it also makes the successes that much cooler. You know?

I don't have any advice really. That NEED to get out of school can be so overwhelming. To the general population, you would appear to have succeeded by finishing your degree, but you would still feel that unfinished project every day. That's a hard decision to make, and there really isn't an answer.

Drink some wine, snuggle with the doggies, and whatever you decide, don't look back. Regret is sure to make any choice unacceptable.

Joline said...

I am sorry that this happened. I think that is you stick it out and fight through this you will a) end up with a great project, possible publication (I am not sure if this is your plan) and a launching platform for applying for grants or b) if it doesn't come off successful, you can still write an article (everyone in the scientific community knows we need articles about successes and non-successes. I wish you luck and longevity of sight with your decision. I think you will be a great researcher.

Julie Birkemeier Photography said...

Don't give up! I LOVE what Rhonda said, and I totally agree. I'm reading Carl Sagan's The Demon Haunted World right now, and it's totally giving me appreciation for the wonder of science, and I have so much respect for you and your colleagues. You can do it!

Pilar said...

I totally agree with Rhonda. And this reminds me of all the stories about Bell and other scientists... Don't think of it as a failure, but as a discovery of things that don't work. I know it's hard not to get discouraged, but that's the beauty of things that are difficult, that if you make it and get through all the obstacles, nobody can take that away from you, you'll feel very accomplished, and in this case you'll have a scientific breakthrough. You can do it Mary!!!

Old Angie said...

I know how frustrated you must be with all the setbacks you've encountered with your dissertation. I agree with everyone that you are definately not a failure. I know this is hard to see sometimes when all you encounter is roadblocks. My advice would be to wait and shoot for an August deadline. I know how stressed out I was trying to finish up my thesis by a May deadline and I didn't have the setbacks that you've dealt with.

Regarding the fish kill, I'm not exactly clear what you mean by the reagents being contaminated but I think it sounds like it's the chemicals you'r' using to treat the water? Is there the possibility that any of the fish are diseased??? This might contribute to half the population dying. One thing to also consider is you might want to move the fish into new tanks with new water and remove as many variables that could be linked to the contamination as possible. Does that make sense? I know that contaminants can leach into the seals of aquarium tanks which is why using new tanks might solve the problem. I'm not sure if this will work but it's worth a shot.

Hang in there!